Azfi_s0001.g000398 (VPS4, SKD1, ATSKD1)

Aliases : VPS4, SKD1, ATSKD1

Description : EC_3.6 hydrolase acting on acid anhydride & original description: CDS=213-1577

Gene families : OG0002846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0001.g000398
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001126.11	VPS4, SKD1, ATSKD1	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1...	0.02	OrthoFinder output from all 47 species
Cre02.g079300	VPS4, SKD1, ATSKD1	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.02	OrthoFinder output from all 47 species
Dac_g03336	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
Dcu_g14391	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
LOC_Os01g04814.1	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.03	OrthoFinder output from all 47 species
Sam_g37514	No alias	EC_3.6 hydrolase acting on acid anhydride & original...	0.04	OrthoFinder output from all 47 species
Zm00001e016954_P004	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.05	OrthoFinder output from all 47 species
Zm00001e025779_P001	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004107	chorismate synthase activity	IEP	HCCA
MF	GO:0004143	diacylglycerol kinase activity	IEP	HCCA
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006541	glutamine metabolic process	IEP	HCCA
BP	GO:0006542	glutamine biosynthetic process	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0007205	protein kinase C-activating G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016211	ammonia ligase activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	HCCA
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	184	313
IPR015415	Vps4_C	387	451
IPR007330	MIT_dom	7	70

External Links

No external refs found!

Azfi_s0001.g000398 (VPS4, SKD1, ATSKD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation