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  5. Ceric.38G055600.1

Ceric.38G055600.1 (PTAC17, Ceric.38G055600)


Aliases : PTAC17, Ceric.38G055600

Description : cofactor of plastid-encoded RNA polymerase *(TAC17) & original description: pacid=50579586 polypeptide=Ceric.38G055600.1.p locus=Ceric.38G055600 ID=Ceric.38G055600.1.v2.1 annot-version=v2.1


Gene families : OG0001348 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001348_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.38G055600.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 PTAC17,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
AT1G80480 PTAC17 plastid transcriptionally active 17 0.07 OrthoFinder output from all 47 species
Adi_g011336 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
Adi_g057640 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Aop_g09671 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.06 OrthoFinder output from all 47 species
Dcu_g04708 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.05 OrthoFinder output from all 47 species
Gb_00365 PTAC17 TAC17 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
LOC_Os02g55630.1 PTAC17, LOC_Os02g55630 TAC17 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
MA_10426227g0010 PTAC17 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g05690.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g12994 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.08 OrthoFinder output from all 47 species
Pp3c11_23140V3.1 PTAC17, Pp3c11_23140 plastid transcriptionally active 17 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR011629 CobW-like_C 376 469
IPR003495 CobW/HypB/UreG_dom 101 285
No external refs found!