Aliases : NFD2, HMG BETA 1, HMGB2, NFD02, Ceric.38G024600
Description : DNA bending architectural protein *(HMG-B) & original description: pacid=50579568 polypeptide=Ceric.38G024600.1.p locus=Ceric.38G024600 ID=Ceric.38G024600.1.v2.1 annot-version=v2.1
Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Aspi01Gene12168.t1 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene57132.t1 | Aspi01Gene57132 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001339.6 | NFD2, HMG BETA... | No description available | 0.02 | OrthoFinder output from all 47 species | |
Cre06.g261450 | ATHMG, HMG, SSRP1, NFD | No description available | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g34613 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01021424001 | No alias | High mobility group B protein 14 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g15810.1 | LOC_Os02g15810 | High mobility group B protein 13 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g32176 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g12748 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g22023 | NFD4, HMGB4, NFD04 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g48386 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Sam_g02757 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Sam_g37720 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g50490 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Smo73858 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
Solyc04g008820.3.1 | HMGB6, Solyc04g008820 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g04270 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g15059 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR009071 | HMG_box_dom | 49 | 118 |
No external refs found! |