1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.38G012000.1

Ceric.38G012000.1 (Ceric.38G012000)


Aliases : Ceric.38G012000

Description : not classified & original description: pacid=50579791 polypeptide=Ceric.38G012000.1.p locus=Ceric.38G012000 ID=Ceric.38G012000.1.v2.1 annot-version=v2.1


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.38G012000.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Als_g07773 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g23125 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01754 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aob_g04427 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Aop_g10028 No alias A1-class (Pepsin) protease & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene22926.t2 Aspi01Gene22926 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29959 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Cre11.g476200 No alias No description available 0.06 OrthoFinder output from all 47 species
Dac_g28420 No alias regulatory protein of RNA homeostasis & original... 0.06 OrthoFinder output from all 47 species
Dcu_g07455 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Dcu_g17295 No alias regulatory protein of RNA homeostasis & original... 0.06 OrthoFinder output from all 47 species
Ehy_g10013 ZFWD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g57365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16999 No alias regulatory protein of RNA homeostasis & original... 0.06 OrthoFinder output from all 47 species
Lfl_g40942 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp3g23720.1 No alias C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Nbi_g02248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10683 No alias A1-class (Pepsin) protease & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g23447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g29816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30390 No alias regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Ore_g32193 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g08692 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ppi_g05890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17330 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000115 No alias platform ATPase CDC48 & original description: CDS=3649-4851 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005344 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025558 No alias regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0240.g026606 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Sam_g09323 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Sam_g16004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24728 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Sam_g26314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g072720.3.1 Solyc06g072720 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Tin_g11119 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Zm00001e040205_P001 Zm00001e040205 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 181 202
IPR000571 Znf_CCCH 228 254
IPR000571 Znf_CCCH 118 142
No external refs found!