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  5. Ceric.38G003600.1

Ceric.38G003600.1 (ATTRB1, TRB1, Ceric.38G003600)


Aliases : ATTRB1, TRB1, Ceric.38G003600

Description : not classified & original description: pacid=50579492 polypeptide=Ceric.38G003600.1.p locus=Ceric.38G003600 ID=Ceric.38G003600.1.v2.1 annot-version=v2.1


Gene families : OG0000994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000994_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.38G003600.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00193000 ATTRB1, TRB1,... RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
Als_g20024 ATTRB1, TRB1 PRC2-recruiting factor (TRB) of PRC2 histone methylation... 0.03 OrthoFinder output from all 47 species
Cba_g03190 ATTRB1, TRB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g40670.1 ATTRB1, TRB1,... PRC2-recruiting factor (TRB). transcription factor (MYB-related) 0.04 OrthoFinder output from all 47 species
Lfl_g36360 ATTRB1, TRB1 PRC2-recruiting factor (TRB) of PRC2 histone methylation... 0.03 OrthoFinder output from all 47 species
Mp3g05000.1 ATTRB1, TRB1 PRC2-recruiting factor (TRB). transcription factor (MYB-related) 0.04 OrthoFinder output from all 47 species
Sam_g52367 No alias PRC2-recruiting factor (TRB) of PRC2 histone methylation... 0.02 OrthoFinder output from all 47 species
Zm00001e020011_P001 Zm00001e020011 transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 123 181
IPR001005 SANT/Myb 5 56
No external refs found!