1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.37G065700.1

Ceric.37G065700.1 (Ceric.37G065700)


Aliases : Ceric.37G065700

Description : RNA helicase *(RCF1) & original description: pacid=50616170 polypeptide=Ceric.37G065700.1.p locus=Ceric.37G065700 ID=Ceric.37G065700.1.v2.1 annot-version=v2.1


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.37G065700.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT1G20920 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
AT3G09620 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Ala_g15868 No alias RNA helicase *(RCF1) & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g03604 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000204.43 No alias RNA processing.RNA splicing.spliceosome... 0.04 OrthoFinder output from all 47 species
Cre16.g676400 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Dcu_g06489 No alias RNA helicase *(RCF1) & original description: none 0.12 OrthoFinder output from all 47 species
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
Gb_03798 No alias RNA helicase (Prp5) 0.05 OrthoFinder output from all 47 species
Len_g49748 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16955 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_175476g0010 No alias RNA helicase (Prp5) 0.04 OrthoFinder output from all 47 species
Mp1g06750.1 No alias RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species
Msp_g02860 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10272 No alias RNA helicase *(RCF1) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g11401 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c5_17030V3.1 Pp3c5_17030 P-loop containing nucleoside triphosphate hydrolases... 0.01 OrthoFinder output from all 47 species
Sam_g52675 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Smo178562 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Solyc12g098700.1.1 Solyc12g098700 RNA helicase (Prp5) 0.09 OrthoFinder output from all 47 species
Zm00001e040204_P001 Zm00001e040204 RNA helicase (Prp5) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 512 683
IPR001650 Helicase_C 721 829
No external refs found!