1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.37G035900.1

Ceric.37G035900.1 (HTA6, Ceric.37G035900)


Aliases : HTA6, Ceric.37G035900

Description : histone *(H2A) & original description: pacid=50615631 polypeptide=Ceric.37G035900.1.p locus=Ceric.37G035900 ID=Ceric.37G035900.1.v2.1 annot-version=v2.1


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.37G035900.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 RAT5, HTA1,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
AMTR_s00057p00215390 HTA6,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
AMTR_s00058p00158560 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
AMTR_s00115p00128810 RAT5, HTA1,... Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.1 OrthoFinder output from all 47 species
AT1G51060 HTA10 histone H2A 10 0.03 OrthoFinder output from all 47 species
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.04 OrthoFinder output from all 47 species
AT3G20670 HTA13 histone H2A 13 0.03 OrthoFinder output from all 47 species
AT4G27230 HTA2 histone H2A 2 0.04 OrthoFinder output from all 47 species
AT5G27670 HTA7 histone H2A 7 0.03 OrthoFinder output from all 47 species
AT5G59870 HTA6 histone H2A 6 0.03 OrthoFinder output from all 47 species
Adi_g003557 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011160 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011169 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011320 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034181 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g043980 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g050953 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052170 HTA10 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078410 HTA13 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g082134 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14593 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G127200.1 HTA6, Ceric.01G127200 histone *(H2A) & original description: pacid=50591993... 0.05 OrthoFinder output from all 47 species
Cre06.g264750 HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from all 47 species
Cre06.g264950 HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from all 47 species
Cre06.g265350 HTA10 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Cre06.g266700 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre06.g268050 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre06.g268300 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre06.g271350 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre06.g273900 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre06.g274200 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre06.g274800 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre06.g275850 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre06.g276500 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre06.g276950 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre12.g504500 HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from all 47 species
Cre12.g504750 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre12.g505550 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre12.g506250 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre13.g570100 HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from all 47 species
Cre13.g590800 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre13.g591150 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g708550 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre17.g709200 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre17.g710400 HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from all 47 species
Cre17.g711700 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre17.g713400 HTA10 Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Cre17.g714500 HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from all 47 species
Dac_g34896 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29975 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011034001 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder output from all 47 species
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder output from all 47 species
GSVIVT01025533001 HTA12 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
GSVIVT01031123001 HTA7 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Gb_06384 HTA6 histone (H2A) 0.05 OrthoFinder output from all 47 species
Gb_07070 GAMMA-H2AX,... histone (H2A) 0.06 OrthoFinder output from all 47 species
Gb_12570 RAT5, HTA1, ATHTA1 histone (H2A) 0.03 OrthoFinder output from all 47 species
Gb_25326 GAMMA-H2AX,... histone (H2A) 0.05 OrthoFinder output from all 47 species
LOC_Os03g17100.1 HTA12, LOC_Os03g17100 histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os05g02300.1 HTA12, LOC_Os05g02300 histone (H2A) 0.07 OrthoFinder output from all 47 species
LOC_Os07g36130.1 HTA2, LOC_Os07g36130 histone (H2A) 0.05 OrthoFinder output from all 47 species
LOC_Os07g36140.1 RAT5, HTA1,... histone (H2A) 0.07 OrthoFinder output from all 47 species
LOC_Os08g33100.1 HTA2, LOC_Os08g33100 histone (H2A) 0.06 OrthoFinder output from all 47 species
LOC_Os12g25120.1 HTA2, LOC_Os12g25120 histone (H2A) 0.05 OrthoFinder output from all 47 species
MA_10426943g0010 HTA7 histone (H2A) 0.03 OrthoFinder output from all 47 species
MA_169054g0020 HTA10 histone (H2A) 0.05 OrthoFinder output from all 47 species
MA_213048g0010 HTA7 histone (H2A) 0.06 OrthoFinder output from all 47 species
MA_22203g0020 RAT5, HTA1, ATHTA1 histone (H2A) 0.05 OrthoFinder output from all 47 species
MA_427046g0010 RAT5, HTA1, ATHTA1 histone (H2A) 0.08 OrthoFinder output from all 47 species
MA_962778g0010 HTA7 histone (H2A) 0.05 OrthoFinder output from all 47 species
Mp2g00760.1 GAMMA-H2AX,... histone (H2A) 0.05 OrthoFinder output from all 47 species
Mp3g00840.1 HTA10 histone (H2A) 0.04 OrthoFinder output from all 47 species
Nbi_g28966 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c5_1791V3.1 HTA10, Pp3c5_1791 histone H2A 10 0.02 OrthoFinder output from all 47 species
Pp3c5_1800V3.1 HTA10, Pp3c5_1800 histone H2A 10 0.02 OrthoFinder output from all 47 species
Pp3c6_29410V3.1 HTA10, Pp3c6_29410 histone H2A 10 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023569 HTA7 histone *(H2A) & original description: CDS=1-555 0.04 OrthoFinder output from all 47 species
Sam_g10764 No alias histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10765 No alias histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29426 No alias histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48398 No alias histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Smo166626 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Smo170948 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Smo73637 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Solyc01g099410.3.1 HTA7, Solyc01g099410 histone (H2A) 0.04 OrthoFinder output from all 47 species
Solyc03g005220.4.1 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc06g084430.4.1 GAMMA-H2AX,... histone (H2A) 0.1 OrthoFinder output from all 47 species
Solyc09g010400.3.1 HTA12, Solyc09g010400 histone (H2A) 0.06 OrthoFinder output from all 47 species
Solyc09g074300.1.1 GAMMA-H2AX,... histone (H2A) 0.09 OrthoFinder output from all 47 species
Solyc10g006560.4.1 HTA10, Solyc10g006560 histone (H2A) 0.05 OrthoFinder output from all 47 species
Solyc11g073250.2.1 HTA12, Solyc11g073250 histone (H2A) 0.06 OrthoFinder output from all 47 species
Solyc11g073260.2.1 HTA12, Solyc11g073260 histone (H2A) 0.04 OrthoFinder output from all 47 species
Solyc12g005270.2.1 HTA10, Solyc12g005270 histone (H2A) 0.07 OrthoFinder output from all 47 species
Spa_g03104 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03210 HTA6 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g03522 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03889 HTA7 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g29751 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32347 HTA6 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g32923 HTA6 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g34289 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45415 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48382 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11136 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14389 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e010515_P001 HTA2, Zm00001e010515 histone (H2A) 0.04 OrthoFinder output from all 47 species
Zm00001e011643_P001 HTA6, Zm00001e011643 histone (H2A) 0.04 OrthoFinder output from all 47 species
Zm00001e012144_P001 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Zm00001e020483_P001 HTA6, Zm00001e020483 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e033014_P001 HTA6, Zm00001e033014 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e034815_P001 HTA12, Zm00001e034815 histone (H2A) 0.06 OrthoFinder output from all 47 species
Zm00001e035183_P002 RAT5, HTA1,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Zm00001e039735_P001 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 16 92
IPR032454 Histone_H2A_C 95 128
No external refs found!