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  5. Ceric.36G014500.1

Ceric.36G014500.1 (ATPRP40A, PRP40A,...)


Aliases : ATPRP40A, PRP40A, Ceric.36G014500

Description : pre-mRNA-processing protein *(PRP40A/B) & original description: pacid=50568233 polypeptide=Ceric.36G014500.1.p locus=Ceric.36G014500 ID=Ceric.36G014500.1.v2.1 annot-version=v2.1


Gene families : OG0002189 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.36G014500.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT1G44910 ATPRP40A, PRP40A pre-mRNA-processing protein 40A 0.04 OrthoFinder output from all 47 species
AT3G19670 ATPRP40B, PRP40B pre-mRNA-processing protein 40B 0.06 OrthoFinder output from all 47 species
Adi_g060760 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Adi_g079667 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.05 OrthoFinder output from all 47 species
Ala_g02608 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Ala_g12867 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Als_g08024 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.05 OrthoFinder output from all 47 species
Als_g23383 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Aob_g02355 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Aop_g14297 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.05 OrthoFinder output from all 47 species
Aop_g27081 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0486.g073429 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Cba_g05967 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Cre07.g351000 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Dac_g14060 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Dac_g31177 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g33711 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.07 OrthoFinder output from all 47 species
Dde_g04452 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02927 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01009302001 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.11 OrthoFinder output from all 47 species
LOC_Os01g34780.1 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.05 OrthoFinder output from all 47 species
Lfl_g04256 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Lfl_g08148 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.09 OrthoFinder output from all 47 species
MA_10433850g0010 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.04 OrthoFinder output from all 47 species
Mp2g00410.1 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.09 OrthoFinder output from all 47 species
Pir_g15971 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g01375 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g08690 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13746 No alias pre-mRNA-processing protein *(PRP40A/B) & original... 0.09 OrthoFinder output from all 47 species
Sam_g40479 No alias pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Smo402621 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Solyc07g022760.4.1 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.07 OrthoFinder output from all 47 species
Spa_g09384 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Spa_g10390 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Tin_g21928 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e020775_P002 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.06 OrthoFinder output from all 47 species
Zm00001e020778_P001 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002713 FF_domain 563 612
IPR002713 FF_domain 772 827
IPR002713 FF_domain 630 679
IPR002713 FF_domain 699 747
IPR001202 WW_dom 317 344
IPR001202 WW_dom 360 385
No external refs found!