Aliases : Ceric.34G068300
Description : large subunit of U2AF pre-RNA splicing auxiliary factor complex & original description: pacid=50622832 polypeptide=Ceric.34G068300.1.p locus=Ceric.34G068300 ID=Ceric.34G068300.1.v2.1 annot-version=v2.1
Gene families : OG0000716 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000716_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00009p00267190 | ATU2AF65A,... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00059p00102910 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
AT1G60900 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.03 | OrthoFinder output from all 47 species | |
Als_g10024 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.04 | OrthoFinder output from all 47 species | |
Als_g38682 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g11505 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g62267 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0262.g060793 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g12276 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g21572 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g38521 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000383.37 | ATU2AF65A | Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia | 0.03 | OrthoFinder output from all 47 species | |
Cre09.g391949 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g05606 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g07575 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g13843 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g48783 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.04 | OrthoFinder output from all 47 species | |
Dde_g02848 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g17019 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os11g45590.1 | ATU2AF65A, LOC_Os11g45590 | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.04 | OrthoFinder output from all 47 species | |
Len_g23866 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Len_g30816 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g19287 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
MA_10429502g0010 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.02 | OrthoFinder output from all 47 species | |
MA_96898g0010 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g35208 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g32508 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g61224 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g25869 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g06430 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g35948 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g09275 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.02 | OrthoFinder output from all 47 species | |
Solyc02g062920.3.1 | ATU2AF65A, Solyc02g062920 | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.04 | OrthoFinder output from all 47 species | |
Solyc02g085570.4.1 | ATU2AF65A, Solyc02g085570 | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.05 | OrthoFinder output from all 47 species | |
Solyc12g008750.3.1 | Solyc12g008750 | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.03 | OrthoFinder output from all 47 species | |
Spa_g04427 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g18763 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g26890 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g15579 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g21668 | ATU2AF65A | large subunit of U2AF pre-RNA splicing auxiliary factor... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e021000_P006 | Zm00001e021000 | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e021119_P005 | ATU2AF65A, Zm00001e021119 | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003729 | mRNA binding | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
CC | GO:0005685 | U1 snRNP | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006376 | mRNA splice site selection | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No external refs found! |