Ceric.33G005200.1 (Ceric.33G005200)

Aliases : Ceric.33G005200

Description : MRM2-type rRNA methyltransferase & original description: pacid=50607400 polypeptide=Ceric.33G005200.1.p locus=Ceric.33G005200 ID=Ceric.33G005200.1.v2.1 annot-version=v2.1

Gene families : OG0004018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004018_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.33G005200.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00229900	evm_27.TU.AmTr_v1...	No description available	0.04	OrthoFinder output from all 47 species
AT4G25730	No alias	FtsJ-like methyltransferase family protein	0.08	OrthoFinder output from all 47 species
Ala_g14193	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g01128	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g22298	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g007467	No alias	MRM2-type rRNA methyltransferase & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.16	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cre12.g529500	No alias	No description available	0.03	OrthoFinder output from all 47 species
Dcu_g09125	No alias	MRM2-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01023801001	No alias	No description available	0.05	OrthoFinder output from all 47 species
LOC_Os05g49230.1	LOC_Os05g49230	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Len_g20213	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g02148	No alias	MRM2-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
MA_10429557g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_158214g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Nbi_g01309	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g20920	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g01371	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g15947	No alias	MRM2-type rRNA methyltransferase & original description: none	0.05	OrthoFinder output from all 47 species
Smo141188	No alias	No description available	0.05	OrthoFinder output from all 47 species
Smo78506	No alias	No description available	0.05	OrthoFinder output from all 47 species
Tin_g15529	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e026556_P001	Zm00001e026556	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Zm00001e032456_P001	Zm00001e032456	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012920	rRNA_MeTfrase_SPB1-like_C	599	789
IPR002877	RNA_MeTrfase_FtsJ_dom	24	203
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	236	381

External Links

No external refs found!

Ceric.33G005200.1 (Ceric.33G005200)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation