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  5. Ceric.29G033700.1

Ceric.29G033700.1 (YCF4, Ceric.29G033700)


Aliases : YCF4, Ceric.29G033700

Description : protein involved in PS-I assembly *(YCF4) & original description: pacid=50625164 polypeptide=Ceric.29G033700.1.p locus=Ceric.29G033700 ID=Ceric.29G033700.1.v2.1 annot-version=v2.1


Gene families : OG0009318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009318_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.29G033700.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02490p00007250 YCF4,... Photosystem I assembly protein Ycf4 OS=Amborella trichopoda 0.04 OrthoFinder output from all 47 species
ATCG00520 YCF4 unfolded protein binding 0.11 OrthoFinder output from all 47 species
Aev_g15963 YCF4 protein involved in PS-I assembly *(YCF4) & original... 0.15 OrthoFinder output from all 47 species
Aob_g29003 YCF4 protein involved in PS-I assembly *(YCF4) & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G014500.1 YCF4, Ceric.02G014500 protein involved in PS-I assembly *(YCF4) & original... 0.05 OrthoFinder output from all 47 species
Ceric.02G046400.1 Ceric.02G046400 not classified & original description: pacid=50584149... 0.05 OrthoFinder output from all 47 species
Ceric.05G050000.1 YCF4, Ceric.05G050000 protein involved in PS-I assembly *(YCF4) & original... 0.09 OrthoFinder output from all 47 species
Ceric.38G006800.1 YCF4, Ceric.38G006800 protein involved in PS-I assembly *(YCF4) & original... 0.09 OrthoFinder output from all 47 species
GSVIVT01030619001 YCF4 Photosystem I assembly protein Ycf4 OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
Gb_22391 YCF4 YCF4 protein involved in PS-I assembly 0.04 OrthoFinder output from all 47 species
LOC_Os01g58049.1 LOC_Os01g58049 YCF4 protein involved in PS-I assembly 0.03 OrthoFinder output from all 47 species
LOC_Os02g24604.1 YCF4, LOC_Os02g24604 YCF4 protein involved in PS-I assembly 0.09 OrthoFinder output from all 47 species
LOC_Os06g39744.1 YCF4, LOC_Os06g39744 YCF4 protein involved in PS-I assembly 0.09 OrthoFinder output from all 47 species
Mpzg00380.1 YCF4 YCF4 protein involved in PS-I assembly 0.03 OrthoFinder output from all 47 species
Solyc00g500019.1.1 YCF4, Solyc00g500019 Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.05 OrthoFinder output from all 47 species
Solyc00g500066.1.1 YCF4, Solyc00g500066 Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009522 photosystem I IEA Interproscan
CC GO:0009579 thylakoid IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0009922 fatty acid elongase activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003359 PSI_Ycf4_assembly 8 138
No external refs found!