Ceric.26G046100.1 (Ceric.26G046100)

Aliases : Ceric.26G046100

Description : component *(CASC3) of RNA quality control Exon Junction complex & original description: pacid=50600232 polypeptide=Ceric.26G046100.1.p locus=Ceric.26G046100 ID=Ceric.26G046100.1.v2.1 annot-version=v2.1

Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.26G046100.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g004430	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g074719	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.05	OrthoFinder output from all 47 species
Aob_g14440	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Aop_g13512	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Aspi01Gene11995.t2	Aspi01Gene11995	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Cba_g37603	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Cba_g75996	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Dac_g09674	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Dac_g10441	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Dcu_g14577	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.06	OrthoFinder output from all 47 species
Ehy_g30112	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.05	OrthoFinder output from all 47 species
GSVIVT01017130001	No alias	RNA processing.RNA quality control Exon Junction complex...	0.04	OrthoFinder output from all 47 species
LOC_Os01g41190.2	LOC_Os01g41190	component CASC3 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species
Len_g11567	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Lfl_g07367	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.05	OrthoFinder output from all 47 species
Mp8g03760.1	No alias	component CASC3 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species
Ore_g37838	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Pir_g07360	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Pir_g53169	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Sam_g27144	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Solyc03g120300.3.1	Solyc03g120300	component CASC3 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species
Tin_g04726	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Zm00001e020605_P001	Zm00001e020605	component CASC3 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0035145	exon-exon junction complex	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018545	Btz_dom	112	200

External Links

No external refs found!

Ceric.26G046100.1 (Ceric.26G046100)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation