Ceric.23G086900.1 (Ceric.23G086900)


Aliases : Ceric.23G086900

Description : component *(SOP1) of PAXT RNA-exosome-activation complex & original description: pacid=50609705 polypeptide=Ceric.23G086900.1.p locus=Ceric.23G086900 ID=Ceric.23G086900.1.v2.1 annot-version=v2.1


Gene families : OG0004256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004256_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.23G086900.1

Target Alias Description ECC score Gene Family Method Actions
AT1G21580 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.05 OrthoFinder output from all 47 species
Adi_g086844 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.06 OrthoFinder output from all 47 species
Ala_g33279 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.08 OrthoFinder output from all 47 species
Aob_g26394 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.06 OrthoFinder output from all 47 species
Aop_g14012 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.02 OrthoFinder output from all 47 species
Cba_g07788 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Dac_g22545 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01008802001 No alias RNA processing.RNA decay.exosome complex.associated... 0.07 OrthoFinder output from all 47 species
LOC_Os06g43120.1 LOC_Os06g43120 RNA degradation surveillance factor (SOP1) 0.07 OrthoFinder output from all 47 species
Len_g41224 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.06 OrthoFinder output from all 47 species
Lfl_g16590 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.14 OrthoFinder output from all 47 species
MA_140138g0020 No alias RNA degradation surveillance factor (SOP1) 0.03 OrthoFinder output from all 47 species
Nbi_g12684 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.02 OrthoFinder output from all 47 species
Ore_g44276 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.04 OrthoFinder output from all 47 species
Pir_g15166 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.07 OrthoFinder output from all 47 species
Ppi_g15340 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.08 OrthoFinder output from all 47 species
Sam_g49510 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Solyc04g057990.4.1 Solyc04g057990 RNA degradation surveillance factor (SOP1) 0.06 OrthoFinder output from all 47 species
Spa_g22203 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.06 OrthoFinder output from all 47 species
Spa_g45442 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e037509_P004 Zm00001e037509 RNA degradation surveillance factor (SOP1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!