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  5. Ceric.23G051700.1

Ceric.23G051700.1 (Ceric.23G051700)


Aliases : Ceric.23G051700

Description : trans-splicing factor *(PPR4) & original description: pacid=50610081 polypeptide=Ceric.23G051700.1.p locus=Ceric.23G051700 ID=Ceric.23G051700.1.v2.1 annot-version=v2.1


Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.23G051700.1

Target Alias Description ECC score Gene Family Method Actions
AT5G04810 No alias pentatricopeptide (PPR) repeat-containing protein 0.07 OrthoFinder output from all 47 species
Adi_g059076 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42769 No alias trans-splicing factor *(PPR4) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g11599 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11518 No alias trans-splicing factor *(PPR4) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0073.g037201 No alias trans-splicing factor *(PPR4) & original description:... 0.07 OrthoFinder output from all 47 species
Dcu_g11762 No alias trans-splicing factor *(PPR4) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01034651001 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.09 OrthoFinder output from all 47 species
Gb_31760 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58780.1 LOC_Os04g58780 Pentatricopeptide repeat-containing protein At5g04810,... 0.07 OrthoFinder output from all 47 species
Lfl_g07399 No alias trans-splicing factor *(PPR4) & original description: none 0.08 OrthoFinder output from all 47 species
MA_10434757g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
MA_70567g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.04 OrthoFinder output from all 47 species
Msp_g06326 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g26176 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04509 No alias trans-splicing factor *(PPR4) & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g08436 No alias trans-splicing factor *(PPR4) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g30415 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015580 No alias trans-splicing factor *(PPR4) & original description: CDS=47-2710 0.04 OrthoFinder output from all 47 species
Solyc04g009720.1.1 Solyc04g009720 Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Solyc04g009730.4.1 Solyc04g009730 Pentatricopeptide repeat-containing protein At5g04810,... 0.04 OrthoFinder output from all 47 species
Solyc11g006680.3.1 Solyc11g006680 Pentatricopeptide repeat-containing protein At5g04810,... 0.06 OrthoFinder output from all 47 species
Spa_g27232 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041970_P002 Zm00001e041970 Pentatricopeptide repeat-containing protein At5g04810,... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 648 696
IPR002885 Pentatricopeptide_repeat 439 486
IPR002885 Pentatricopeptide_repeat 788 835
IPR002885 Pentatricopeptide_repeat 508 556
IPR002885 Pentatricopeptide_repeat 578 627
IPR000504 RRM_dom 194 266
IPR002885 Pentatricopeptide_repeat 365 415
IPR002885 Pentatricopeptide_repeat 713 763
No external refs found!