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  5. Ceric.20G028100.1

Ceric.20G028100.1 (Ceric.20G028100)


Aliases : Ceric.20G028100

Description : not classified & original description: pacid=50566612 polypeptide=Ceric.20G028100.1.p locus=Ceric.20G028100 ID=Ceric.20G028100.1.v2.1 annot-version=v2.1


Gene families : OG0005452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.20G028100.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00182070 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g021116 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g02493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64061.t1 Aspi01Gene64061 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.17 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Cre12.g522850 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dac_g07921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49902 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01028137001 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os03g19530.1 LOC_Os03g19530 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Len_g35470 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_50249g0010 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Mp4g12240.1 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g18559 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17008 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19373 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc01g079330.3.1 Solyc01g079330 DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Spa_g50010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001454_P001 Zm00001e001454 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.09 OrthoFinder output from all 47 species
Zm00001e038325_P002 Zm00001e038325 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 469 568
IPR011545 DEAD/DEAH_box_helicase_dom 252 423
No external refs found!