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  5. Ceric.20G005700.1

Ceric.20G005700.1 (Ceric.20G005700)


Aliases : Ceric.20G005700

Description : SMARCI component *(BRD) of SWI/SNF chromatin remodeling complex & original description: pacid=50566053 polypeptide=Ceric.20G005700.1.p locus=Ceric.20G005700 ID=Ceric.20G005700.1.v2.1 annot-version=v2.1


Gene families : OG0001292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.20G005700.1

Target Alias Description ECC score Gene Family Method Actions
AT5G55040 No alias DNA-binding bromodomain-containing protein 0.03 OrthoFinder output from all 47 species
Ala_g07673 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Als_g57133 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Aspi01Gene72686.t1 Aspi01Gene72686 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cba_g66228 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cba_g77448 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cre04.g225950 TAF1B, TAF1, HAF2 No description available 0.03 OrthoFinder output from all 47 species
Cre17.g711100 No alias No description available 0.02 OrthoFinder output from all 47 species
Dde_g24243 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ehy_g09954 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
LOC_Os03g03870.1 LOC_Os03g03870 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g19175 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
MA_10428440g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_131191g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g15940.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g15318 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Pir_g38779 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Pir_g60712 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Pnu_g05898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11339 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ppi_g41680 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015144 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Sam_g26326 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Solyc07g064700.4.1 Solyc07g064700 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e000248_P001 Zm00001e000248 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 403 484
No external refs found!