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  5. Ceric.1Z192200.1

Ceric.1Z192200.1 (Ceric.1Z192200)


Aliases : Ceric.1Z192200

Description : RNA polymerase-IV-positioning factor *(SHH) & original description: pacid=50597104 polypeptide=Ceric.1Z192200.1.p locus=Ceric.1Z192200 ID=Ceric.1Z192200.1.v2.1 annot-version=v2.1


Gene families : OG0001794 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001794_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.1Z192200.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00262800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Als_g01529 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Dac_g01434 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Gb_33346 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 OrthoFinder output from all 47 species
Sam_g39861 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Solyc10g007130.4.1 Solyc10g007130 RNA polymerase-IV-positioning factor (SHH).... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR032001 SAWADEE_dom 117 244
No external refs found!