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  5. Ceric.1Z161200.1

Ceric.1Z161200.1 (PSBC, Ceric.1Z161200)


Aliases : PSBC, Ceric.1Z161200

Description : component *(PsbC/CP43) of PS-II reaction center complex & original description: pacid=50596935 polypeptide=Ceric.1Z161200.1.p locus=Ceric.1Z161200 ID=Ceric.1Z161200.1.v2.1 annot-version=v2.1


Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.1Z161200.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01196p00010070 PSBC,... Photosystem II CP43 reaction center protein OS=Carica papaya 0.08 OrthoFinder output from all 47 species
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.08 OrthoFinder output from all 47 species
ATCG00280 PSBC photosystem II reaction center protein C 0.09 OrthoFinder output from all 47 species
Aev_g04878 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.13 OrthoFinder output from all 47 species
Als_g01018 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Aob_g06735 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Cba_g32229 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.1 OrthoFinder output from all 47 species
Ceric.02G013100.1 PSBC, Ceric.02G013100 component *(PsbC/CP43) of PS-II reaction center complex... 0.19 OrthoFinder output from all 47 species
Ceric.07G101200.1 PSBC, Ceric.07G101200 not classified & original description: pacid=50626880... 0.07 OrthoFinder output from all 47 species
Ceric.12G058500.1 PSBC, Ceric.12G058500 not classified & original description: pacid=50601680... 0.17 OrthoFinder output from all 47 species
Ceric.12G087100.1 PSBC, Ceric.12G087100 not classified & original description: pacid=50602384... 0.1 OrthoFinder output from all 47 species
Ceric.33G023300.1 PSBC, Ceric.33G023300 component *(PsbC/CP43) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Ceric.38G040900.1 PSBC, Ceric.38G040900 not classified & original description: pacid=50580441... 0.06 OrthoFinder output from all 47 species
Dac_g04293 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.13 OrthoFinder output from all 47 species
Dcu_g10666 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.12 OrthoFinder output from all 47 species
GSVIVT01006662001 PSBC Photosystem II CP43 reaction center protein OS=Platanus... 0.1 OrthoFinder output from all 47 species
GSVIVT01027074001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_06826 PSBC Photosystem II CP43 reaction center protein OS=Cycas... 0.13 OrthoFinder output from all 47 species
Gb_11943 PSBC Photosystem II CP43 reaction center protein... 0.12 OrthoFinder output from all 47 species
Gb_15570 PSBC no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_19153 PSBC Photosystem II CP43 reaction center protein... 0.13 OrthoFinder output from all 47 species
Gb_19166 PSBC Photosystem II CP43 reaction center protein... 0.14 OrthoFinder output from all 47 species
Gb_22672 PSBC Photosystem II CP43 reaction center protein... 0.12 OrthoFinder output from all 47 species
LOC_Os02g24632.1 PSBC, LOC_Os02g24632 component PsbC/CP43 of PS-II reaction center complex 0.17 OrthoFinder output from all 47 species
LOC_Os04g16874.1 PSBC, LOC_Os04g16874 component PsbC/CP43 of PS-II reaction center complex 0.18 OrthoFinder output from all 47 species
LOC_Os10g21212.1 PSBC, LOC_Os10g21212 component PsbC/CP43 of PS-II reaction center complex 0.16 OrthoFinder output from all 47 species
Len_g16437 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Lfl_g10242 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.09 OrthoFinder output from all 47 species
MA_9155188g0010 PSBC Photosystem II CP43 reaction center protein OS=Cuscuta... 0.03 OrthoFinder output from all 47 species
Msp_g00655 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Ore_g02105 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.11 OrthoFinder output from all 47 species
Pnu_g00846 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002255 PSBC not classified & original description: CDS=1-627 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004817 PSBC not classified & original description: CDS=1-717 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006637 PSBC not classified & original description: CDS=1-525 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006638 PSBC not classified & original description: CDS=1-420 0.08 OrthoFinder output from all 47 species
Sam_g14692 No alias component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Smo137689 PSBC Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.15 OrthoFinder output from all 47 species
Solyc00g230070.1.1 PSBC, Solyc00g230070 Photosystem II CP43 reaction center protein OS=Lepidium... 0.05 OrthoFinder output from all 47 species
Solyc00g500054.1.1 PSBC, Solyc00g500054 component PsbD/D2 of PS-II reaction center complex.... 0.18 OrthoFinder output from all 47 species
Solyc00g500136.1.1 PSBC, Solyc00g500136 component PsbD/D2 of PS-II reaction center complex.... 0.18 OrthoFinder output from all 47 species
Solyc00g500206.1.1 PSBC, Solyc00g500206 component PsbD/D2 of PS-II reaction center complex.... 0.18 OrthoFinder output from all 47 species
Solyc05g041230.1.1 PSBC, Solyc05g041230 Photosystem II CP43 reaction center protein... 0.05 OrthoFinder output from all 47 species
Solyc07g009000.1.1 PSBC, Solyc07g009000 Photosystem II CP43 reaction center protein OS=Coffea... 0.04 OrthoFinder output from all 47 species
Solyc09g016930.1.1 PSBC, Solyc09g016930 Photosystem II CP43 reaction center protein OS=Coffea... 0.03 OrthoFinder output from all 47 species
Solyc12g027550.2.1 PSBC, Solyc12g027550 Photosystem II CP43 reaction center protein OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Zm00001e042042_P001 PSBC, Zm00001e042042 Photosystem II CP43 reaction center protein OS=Sorghum... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 31 469
No external refs found!