Ceric.18G061200.1 (HSP93-V, DCA1,...)

Aliases : HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1, Ceric.18G061200

Description : chaperone component *(ClpC) of chloroplast Clp-type protease complex & original description: pacid=50621134 polypeptide=Ceric.18G061200.1.p locus=Ceric.18G061200 ID=Ceric.18G061200.1.v2.1 annot-version=v2.1

Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.18G061200.1
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00065p00179810	CLPB4, CLPB-M,...	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
Adi_g088541	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Ala_g11691	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Ala_g12182	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g47842	HSP93-V, DCA1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g07406	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Aob_g16301	SAG15, CLPD, ERD1	chaperone component *(ClpD) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Aob_g21747	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g16852	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Aop_g22434	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Cba_g20352	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g20998	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cre12.g533351	CLPB3, CLPB-P, APG6	Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dac_g04714	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Dcu_g08738	HSP93-V, DCA1,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g20889	CLPB3, CLPB-P, APG6	EC_3.2 glycosylase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g25408	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
LOC_Os03g31300.1	CLPB3, CLPB-P,...	organellar chaperone (Clp-p\|Clp-m)	0.02	OrthoFinder output from all 47 species
Len_g34142	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Len_g37043	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g59755	CLPB3, CLPB-P, APG6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g02311	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
MA_1160713g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.04	OrthoFinder output from all 47 species
MA_229920g0010	CLPB3, CLPB-P, APG6	Chaperone protein ClpB2, chloroplastic OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_596288g0010	HSP93-V, DCA1,...	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
MA_8117g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.04	OrthoFinder output from all 47 species
Msp_g05637	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Nbi_g10414	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Nbi_g11478	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g12284	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.06	OrthoFinder output from all 47 species
Ore_g29985	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Pir_g11817	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.05	OrthoFinder output from all 47 species
Pir_g16592	CLPB3, CLPB-P, APG6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g19845	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Pp3c5_23010V3.1	HSP93-V, DCA1,...	CLPC homologue 1	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009790	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.06	OrthoFinder output from all 47 species
Sam_g14950	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16602	No alias	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Smo439163	HSP93-V, DCA1,...	External stimuli response.temperature.Hsp...	0.02	OrthoFinder output from all 47 species
Solyc03g118340.3.1	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.03	OrthoFinder output from all 47 species
Spa_g07909	HSP93-V, DCA1,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g10084	HSP93-V, DCA1,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g54113	HSP93-V, DCA1,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e008312_P001	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.08	OrthoFinder output from all 47 species
Zm00001e040778_P001	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004109	coproporphyrinogen oxidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041546	ClpA/ClpB_AAA_lid	434	535
IPR003959	ATPase_AAA_core	633	808
IPR004176	Clp_R_dom	181	232
IPR004176	Clp_R_dom	105	157
IPR003959	ATPase_AAA_core	296	425
IPR019489	Clp_ATPase_C	814	893

External Links

No external refs found!

Ceric.18G061200.1 (HSP93-V, DCA1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation