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Aliases : SWI3A, CHB1, ATSWI3A, Ceric.18G048000
Description : SMARCC component *(SWI3) of chromatin remodeling complex & original description: pacid=50620989 polypeptide=Ceric.18G048000.1.p locus=Ceric.18G048000 ID=Ceric.18G048000.1.v2.1 annot-version=v2.1
Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00059p00072490 | CHB3, ATSWI3D,... | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
| AT4G34430 | CHB3, ATSWI3D | DNA-binding family protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g014216 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g02056 | SWI3A, CHB1, ATSWI3A | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g09005 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g16238 | SWI3A, CHB1, ATSWI3A | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0099.g044199 | SWI3A, CHB1, ATSWI3A | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g15169 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000388.52 | CHB4, SWI3C, ATSWI3C | Chromatin organisation.chromatin remodeling... | 0.01 | OrthoFinder output from all 47 species | |
| Cre08.g364050 | CHB3, ATSWI3D | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g11402 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g09982 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g16559 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01008584001 | SWI3A, CHB1, ATSWI3A | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01008831001 | CHB4, SWI3C, ATSWI3C | Chromatin organisation.chromatin remodeling... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01031951001 | CHB3, ATSWI3D | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g40420.1 | SWI3A, CHB1,... | component BAF255/170 of chromatin remodeling complex | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os12g07730.1 | CHB4, SWI3C,... | component BAF255/170 of chromatin remodeling complex | 0.04 | OrthoFinder output from all 47 species | |
| Len_g07560 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.06 | OrthoFinder output from all 47 species | |
| Len_g14234 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g08793 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10426836g0010 | SWI3A, CHB1, ATSWI3A | component BAF255/170 of chromatin remodeling complex | 0.03 | OrthoFinder output from all 47 species | |
| MA_10432371g0010 | CHB3, ATSWI3D | component BAF255/170 of chromatin remodeling complex | 0.05 | OrthoFinder output from all 47 species | |
| MA_10432371g0020 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Mp2g06000.1 | CHB4, SWI3C, ATSWI3C | component BAF255/170 of chromatin remodeling complex | 0.02 | OrthoFinder output from all 47 species | |
| Mp8g15610.1 | SWI3A, CHB1, ATSWI3A | component BAF255/170 of chromatin remodeling complex | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g26887 | SWI3A, CHB1, ATSWI3A | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g39186 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g10605 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g27615 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g07213 | No alias | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g52721 | No alias | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g097450.4.1 | SWI3A, CHB1,... | component BAF255/170 of chromatin remodeling complex | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g060120.3.1 | CHB4, SWI3C,... | component BAF255/170 of chromatin remodeling complex | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g06724 | SWI3A, CHB1, ATSWI3A | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g15980 | SWI3A, CHB1, ATSWI3A | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g30642 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g04137 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromaTin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g21307 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromaTin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e018409_P001 | CHB4, SWI3C,... | component BAF255/170 of chromatin remodeling complex | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e024548_P001 | CHB4, SWI3C,... | component BAF255/170 of chromatin remodeling complex | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004000 | adenosine deaminase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
| MF | GO:0008233 | peptidase activity | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| MF | GO:0008276 | protein methyltransferase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | HCCA |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | HCCA |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | HCCA |
| MF | GO:0018024 | histone lysine N-methyltransferase activity | IEP | HCCA |
| MF | GO:0019239 | deaminase activity | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| MF | GO:0042054 | histone methyltransferase activity | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |