1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.18G011900.1

Ceric.18G011900.1 (LHCA3, Ceric.18G011900)


Aliases : LHCA3, Ceric.18G011900

Description : component *(LHCa3) of LHC-I complex & original description: pacid=50622003 polypeptide=Ceric.18G011900.1.p locus=Ceric.18G011900 ID=Ceric.18G011900.1.v2.1 annot-version=v2.1


Gene families : OG0003350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003350_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.18G011900.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00059490 LHCA3,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.17 OrthoFinder output from all 47 species
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.15 OrthoFinder output from all 47 species
Adi_g042980 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.21 OrthoFinder output from all 47 species
Adi_g075747 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.23 OrthoFinder output from all 47 species
Aev_g02928 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Aev_g03708 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g05970 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.18 OrthoFinder output from all 47 species
Ala_g34376 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.19 OrthoFinder output from all 47 species
Als_g11489 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g03906 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g03958 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Aob_g09708 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g18182 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g06037 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.18 OrthoFinder output from all 47 species
Aspi01Gene41799.t1 LHCA3, Aspi01Gene41799 component *(LHCa3) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Aspi01Gene65876.t1 LHCA3, Aspi01Gene65876 component *(LHCa3) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009434 LHCA3 component *(LHCa3) of LHC-I complex & original... 0.08 OrthoFinder output from all 47 species
Cba_g13564 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Cre11.g467573 LHCA3 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.22 OrthoFinder output from all 47 species
Dac_g34473 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.22 OrthoFinder output from all 47 species
Dcu_g10600 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g33769 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.18 OrthoFinder output from all 47 species
Dde_g13335 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Ehy_g23566 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.18 OrthoFinder output from all 47 species
GSVIVT01019377001 LHCA3 Photosystem I chlorophyll a/b-binding protein 3-1,... 0.09 OrthoFinder output from all 47 species
Gb_10163 LHCA3 component LHCa3 of LHC-I complex 0.13 OrthoFinder output from all 47 species
LOC_Os02g10390.1 LHCA3, LOC_Os02g10390 component LHCa3 of LHC-I complex 0.12 OrthoFinder output from all 47 species
Len_g17078 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.17 OrthoFinder output from all 47 species
MA_815900g0010 LHCA3 component LHCa3 of LHC-I complex 0.18 OrthoFinder output from all 47 species
Mp4g00930.1 LHCA3 component LHCa3 of LHC-I complex 0.27 OrthoFinder output from all 47 species
Msp_g02710 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Nbi_g27710 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Ore_g03894 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30216 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Ore_g33396 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.16 OrthoFinder output from all 47 species
Pir_g15180 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.16 OrthoFinder output from all 47 species
Pnu_g28252 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Pp3c16_16040V3.1 LHCA3, Pp3c16_16040 photosystem I light harvesting complex gene 3 0.08 OrthoFinder output from all 47 species
Pp3c27_7010V3.1 LHCA3, Pp3c27_7010 photosystem I light harvesting complex gene 3 0.07 OrthoFinder output from all 47 species
Pp3c6_22090V3.1 LHCA3, Pp3c6_22090 photosystem I light harvesting complex gene 3 0.09 OrthoFinder output from all 47 species
Ppi_g19878 LHCA3 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g44081 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017111 LHCA3 component *(LHCa3) of LHC-I complex & original... 0.14 OrthoFinder output from all 47 species
Sam_g01310 No alias component *(LHCa3) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g06804 No alias component *(LHCa3) of LHC-I complex & original description: none 0.15 OrthoFinder output from all 47 species
Sam_g47244 No alias component *(LHCa3) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Smo160411 LHCA3 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.08 OrthoFinder output from all 47 species
Solyc10g007690.3.1 LHCA3, Solyc10g007690 component LHCa3 of LHC-I complex 0.3 OrthoFinder output from all 47 species
Solyc12g011280.2.1 LHCA3, Solyc12g011280 component LHCa3 of LHC-I complex 0.24 OrthoFinder output from all 47 species
Spa_g07265 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.17 OrthoFinder output from all 47 species
Tin_g01697 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.19 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030091 protein repair IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 79 257
No external refs found!