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  5. Ceric.17G060200.1

Ceric.17G060200.1 (ATRECQ4A, ATSGS1,...)


Aliases : ATRECQ4A, ATSGS1, RECQ4A, Ceric.17G060200

Description : helicase component *(RecQ4A) of RTR Holliday junction dissolution complex & original description: pacid=50617521 polypeptide=Ceric.17G060200.1.p locus=Ceric.17G060200 ID=Ceric.17G060200.1.v2.1 annot-version=v2.1


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.17G060200.1

Target Alias Description ECC score Gene Family Method Actions
Cre04.g219750 ATRECQ4A, ATSGS1, RECQ4A Cell cycle.mitosis and meiosis.meiotic... 0.02 OrthoFinder output from all 47 species
Dde_g43590 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
GSVIVT01023325001 ATRECQ4A, ATSGS1, RECQ4A Cell cycle.mitosis and meiosis.meiotic... 0.1 OrthoFinder output from all 47 species
Gb_08699 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Gb_33079 ATRECQ4A, ATSGS1, RECQ4A helicase component RecQ4A of RTR Holliday junction... 0.04 OrthoFinder output from all 47 species
LOC_Os04g35420.1 ATRECQ4A,... helicase component RecQ4A of RTR Holliday junction... 0.05 OrthoFinder output from all 47 species
Len_g10275 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Len_g14718 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
MA_10435954g0010 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10436537g0010 ATRECQ4A, ATSGS1, RECQ4A helicase component RecQ4A of RTR Holliday junction... 0.07 OrthoFinder output from all 47 species
Mp4g14290.1 ATRECQ4A, ATSGS1, RECQ4A helicase component RecQ4A of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
Mp4g16510.1 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ore_g41299 RECQI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41947 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0107.g020334 RecQl3, ATRECQ3 not classified & original description: CDS=36-1856 0.03 OrthoFinder output from all 47 species
Sam_g25559 No alias helicase component *(RecQ4A) of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
Sam_g50849 No alias component *(MED34) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Smo41328 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc01g100280.4.1 RECQI1, Solyc01g100280 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc01g103960.3.1 ATRECQ4A,... helicase component RecQ4A of RTR Holliday junction... 0.04 OrthoFinder output from all 47 species
Solyc08g074600.4.1 MED34, ATRECQ2,... component MED34 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
MF GO:0043138 3'-5' DNA helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 507 674
IPR032284 RecQ_Zn-bd 830 914
IPR018982 RQC_domain 923 1036
IPR001650 Helicase_C 712 818
IPR002121 HRDC_dom 1079 1145
No external refs found!