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  5. Ceric.17G019800.1

Ceric.17G019800.1 (EMB2754, Ceric.17G019800)


Aliases : EMB2754, Ceric.17G019800

Description : HOPS-specific component *(VPS39) of HOPS/CORVET membrane tethering complexes & original description: pacid=50617642 polypeptide=Ceric.17G019800.1.p locus=Ceric.17G019800 ID=Ceric.17G019800.1.v2.1 annot-version=v2.1


Gene families : OG0004665 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004665_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.17G019800.1

Target Alias Description ECC score Gene Family Method Actions
AT4G36630 EMB2754 Vacuolar sorting protein 39 0.05 OrthoFinder output from all 47 species
Cre06.g278124 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g39227 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Gb_04249 EMB2754 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Mp3g21320.1 EMB2754 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Zm00001e005474_P001 EMB2754, Zm00001e005474 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
InterPro domains Description Start Stop
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 517 627
IPR000547 Clathrin_H-chain/VPS_repeat 646 778
IPR001180 CNH_dom 81 287
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 910 1017
No external refs found!