Aliases : Ceric.17G002800
Description : RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex & original description: pacid=50617181 polypeptide=Ceric.17G002800.1.p locus=Ceric.17G002800 ID=Ceric.17G002800.1.v2.1 annot-version=v2.1
Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00029p00206820 | evm_27.TU.AmTr_v1... | RNA processing.RNA decay.exosome complex.associated... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00066p00125980 | evm_27.TU.AmTr_v1... | RNA processing.RNA decay.exosome complex.associated... | 0.03 | OrthoFinder output from all 47 species | |
AT1G59760 | No alias | RNA helicase, ATP-dependent, SK12/DOB1 protein | 0.03 | OrthoFinder output from all 47 species | |
AT2G06990 | HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | 0.06 | OrthoFinder output from all 47 species | |
Adi_g022453 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Als_g01202 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.04 | OrthoFinder output from all 47 species | |
Aob_g12480 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0027.g023708 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0100.g044290 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020723.108 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g03136 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g31250 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g01701 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g24206 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01024809001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01037437001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os11g07500.1 | HEN2, LOC_Os11g07500 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Len_g58854 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g02277 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.03 | OrthoFinder output from all 47 species | |
MA_33462g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g02403 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g03153 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g03731 | HEN2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g03894 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.04 | OrthoFinder output from all 47 species | |
Pnu_g07585 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g07586 | HEN2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g10573 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g14012 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g103080.3.1 | Solyc01g103080 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g08781 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g11434 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g29638 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g21647 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e013693_P002 | Zm00001e013693 | RNA helicase component SKI2 of SUPERKILLER (SKI)... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e036710_P004 | Zm00001e036710 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004177 | aminopeptidase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
MF | GO:0008233 | peptidase activity | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
No external refs found! |