Ceric.16G053600.1 (HVT1, ATVT-1, Ceric.16G053600)


Aliases : HVT1, ATVT-1, Ceric.16G053600

Description : not classified & original description: pacid=50590253 polypeptide=Ceric.16G053600.1.p locus=Ceric.16G053600 ID=Ceric.16G053600.1.v2.1 annot-version=v2.1


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.16G053600.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00104970 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G06670 NIH nuclear DEIH-boxhelicase 0.04 OrthoFinder output from all 47 species
AT2G30800 HVT1, ATVT-1 helicase in vascular tissue and tapetum 0.03 OrthoFinder output from all 47 species
Adi_g089369 HVT1, ATVT-1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g10871 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12887 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_13707 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os01g56190.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Lfl_g02414 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434659g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Nbi_g17975 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26937 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo50132 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc07g044930.3.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g10294 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 509 573
IPR007502 Helicase-assoc_dom 810 893
IPR011545 DEAD/DEAH_box_helicase_dom 260 415
IPR011709 DEAD-box_helicase_OB_fold 970 1056
IPR001374 R3H_dom 98 153
IPR001650 Helicase_C 627 745
No external refs found!