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  5. Ceric.16G048100.1

Ceric.16G048100.1 (RABA4D, ATRABA4D,...)


Aliases : RABA4D, ATRABA4D, Ceric.16G048100

Description : A-class RAB GTPase & original description: pacid=50588864 polypeptide=Ceric.16G048100.1.p locus=Ceric.16G048100 ID=Ceric.16G048100.1.v2.1 annot-version=v2.1


Gene families : OG0001718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001718_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.16G048100.1
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AT3G12160 RABA4D, ATRABA4D RAB GTPase homolog A4D 0.03 OrthoFinder output from all 47 species
Aop_g41162 ATRABA4C, RABA4C, SMG1 A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0409.g068486 ATRABA4C, RABA4C, SMG1 A-class RAB GTPase & original description: CDS=114-785 0.04 OrthoFinder output from all 47 species
Ehy_g06409 ATRABA4C, RABA4C, SMG1 A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g10940.1 ATRABA4C,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Ore_g21987 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22760 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59186 ATRABA4C, RABA4C, SMG1 A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000578 ATRABA4C, RABA4C, SMG1 A-class RAB GTPase & original description: CDS=1-666 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003461 ATRABA4C, RABA4C, SMG1 not classified & original description: CDS=1-543 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011977 RABA4D, ATRABA4D A-class RAB GTPase & original description: CDS=720-1379 0.04 OrthoFinder output from all 47 species
Sam_g17975 No alias A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g079030.2.1 RABA4D,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Spa_g32376 ATRABA4C, RABA4C, SMG1 A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009615_P001 ATRABA4C,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 16 176
No external refs found!