Ceric.15G078000.1 (SIGB, SIG2, SIGA,...)

Aliases : SIGB, SIG2, SIGA, SIG1, RPOD1, Ceric.15G078000

Description : basal Sigma-type transcription factor & original description: pacid=50640816 polypeptide=Ceric.15G078000.1.p locus=Ceric.15G078000 ID=Ceric.15G078000.1.v2.1 annot-version=v2.1

Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.15G078000.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00072720	SIGF, SIG6,...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00011p00266100	SIGB, SIG2,...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AT1G08540	ATSIG1, SIGB,...	RNApolymerase sigma subunit 2	0.03	OrthoFinder output from all 47 species
AT2G36990	SIGF, SIG6,...	RNApolymerase sigma-subunit F	0.04	OrthoFinder output from all 47 species
Adi_g013131	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Adi_g088986	ATSIG1, SIGB,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g07913	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Als_g16248	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Als_g27390	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aob_g09016	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aob_g09018	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aop_g04543	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0178.g056190	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Cba_g05885	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Cba_g10475	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000842.1	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
Dac_g10853	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dcu_g09876	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01032193001	SIGD, SIG4	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
Gb_23845	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
LOC_Os05g51150.1	SIGC, SIG3,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
LOC_Os11g26160.1	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
Len_g27826	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
MA_10429585g0010	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
Nbi_g09351	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g09780	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Nbi_g17161	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g08024	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g14515	SIGF, SIG6,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pnu_g18965	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ppi_g54639	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005131	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023922	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g13485	No alias	basal Sigma-type transcription factor & original...	0.08	OrthoFinder output from all 47 species
Sam_g24688	No alias	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Sam_g24938	No alias	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sam_g37669	No alias	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Solyc01g081490.3.1	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
Solyc09g008040.3.1	SIGF, SIG6,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Tin_g12918	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Zm00001e021420_P001	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Zm00001e032586_P001	SIGC, SIG3,...	basal transcription factor (Sigma)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0047746	chlorophyllase activity	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007627	RNA_pol_sigma70_r2	341	415

External Links

No external refs found!

Ceric.15G078000.1 (SIGB, SIG2, SIGA,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation