Ceric.10G031600.1 (POLGAMMA2, Ceric.10G031600)

Aliases : POLGAMMA2, Ceric.10G031600

Description : DNA polymerase *(POP) & original description: pacid=50613339 polypeptide=Ceric.10G031600.1.p locus=Ceric.10G031600 ID=Ceric.10G031600.1.v2.1 annot-version=v2.1

Gene families : OG0003071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003071_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.10G031600.1
Cluster	HCCA: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00102370	POLGAMMA2,...	Cell cycle.organelle machineries.DNA replication.DNA...	0.05	OrthoFinder output from all 47 species
AT1G50840	POLGAMMA2	polymerase gamma 2	0.03	OrthoFinder output from all 47 species
Adi_g012327	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g12949	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0045.g029951	POLGAMMA2	DNA polymerase *(POP) & original description: CDS=416-3655	0.04	OrthoFinder output from all 47 species
Dcu_g01959	POLGAMMA1	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01014163001	POLGAMMA2	Cell cycle.organelle machineries.DNA replication.DNA...	0.06	OrthoFinder output from all 47 species
Gb_07861	POLGAMMA2	DNA polymerase (POP)	0.03	OrthoFinder output from all 47 species
LOC_Os04g54500.1	POLGAMMA2, LOC_Os04g54500	DNA polymerase (POP)	0.03	OrthoFinder output from all 47 species
Len_g00745	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g02364	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.05	OrthoFinder output from all 47 species
Mp3g17010.1	POLGAMMA2	DNA polymerase (POP)	0.03	OrthoFinder output from all 47 species
Nbi_g16045	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g03974	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g06763	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e041749_P001	POLGAMMA2, Zm00001e041749	DNA polymerase (POP)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	IEA	Interproscan
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008408	3'-5' exonuclease activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002562	3'-5'_exonuclease_dom	241	463
IPR001098	DNA-dir_DNA_pol_A_palm_dom	686	1015

External Links

No external refs found!

Ceric.10G031600.1 (POLGAMMA2, Ceric.10G031600)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation