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  5. Ceric.10G026000.1

Ceric.10G026000.1 (Ceric.10G026000)


Aliases : Ceric.10G026000

Description : scaffold nucleoporin of nuclear pore complex *(RAE1) & original description: pacid=50612190 polypeptide=Ceric.10G026000.1.p locus=Ceric.10G026000 ID=Ceric.10G026000.1.v2.1 annot-version=v2.1


Gene families : OG0004854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.10G026000.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g009219 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.03 OrthoFinder output from all 47 species
Cba_g10923 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species
Cre06.g278097 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
GSVIVT01029758001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
LOC_Os01g44394.1 LOC_Os01g44394 RAE1 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Mp5g18210.1 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Sam_g09907 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.03 OrthoFinder output from all 47 species
Solyc10g047000.2.1 Solyc10g047000 RAE1 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Zm00001e020379_P001 Zm00001e020379 RAE1 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 27 53
IPR001680 WD40_repeat 111 140
No external refs found!