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  5. Ceric.10G007300.1

Ceric.10G007300.1 (RNEE/G, Ceric.10G007300)


Aliases : RNEE/G, Ceric.10G007300

Description : endoribonuclease *(RNase E) & original description: pacid=50612501 polypeptide=Ceric.10G007300.1.p locus=Ceric.10G007300 ID=Ceric.10G007300.1.v2.1 annot-version=v2.1


Gene families : OG0005953 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005953_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.10G007300.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00182640 RNEE/G,... RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
AT2G04270 RNEE/G RNAse E/G-like 0.05 OrthoFinder output from all 47 species
Aev_g13689 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15862 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10843 RNEE/G endoribonuclease *(RNase E) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g48453 RNEE/G endoribonuclease *(RNase E) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02405 RNEE/G endoribonuclease *(RNase E) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g30754 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os08g23430.1 RNEE/G, LOC_Os08g23430 endoribonuclease (RNase E) 0.05 OrthoFinder output from all 47 species
Len_g30159 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10909g0010 RNEE/G endoribonuclease (RNase E) 0.02 OrthoFinder output from all 47 species
Mp7g15630.1 RNEE/G endoribonuclease (RNase E) 0.04 OrthoFinder output from all 47 species
Nbi_g38545 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17965 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01412 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26698 No alias endoribonuclease *(RNase E) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc02g083140.3.1 RNEE/G, Solyc02g083140 endoribonuclease (RNase E) 0.06 OrthoFinder output from all 47 species
Tin_g19266 RNEE/G endoribonuclease *(RNase E) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e003867_P004 RNEE/G, Zm00001e003867 endoribonuclease (RNase E) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003852 2-isopropylmalate synthase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006551 leucine metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009098 leucine biosynthetic process IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019307 RNA-bd_AU-1/RNase_E/G 892 1170
IPR002044 CBM_fam20 397 488
No external refs found!