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  5. Ceric.09G061000.1

Ceric.09G061000.1 (EMB1265, ATCPSF100,...)


Aliases : EMB1265, ATCPSF100, CPSF100, ESP5, Ceric.09G061000

Description : component *(CPSF100/Ydh1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: pacid=50587225 polypeptide=Ceric.09G061000.1.p locus=Ceric.09G061000 ID=Ceric.09G061000.1.v2.1 annot-version=v2.1


Gene families : OG0005611 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005611_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.09G061000.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00247750 EMB1265,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
AT5G23880 EMB1265,... cleavage and polyadenylation specificity factor 100 0.02 OrthoFinder output from all 47 species
Adi_g012206 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Als_g01056 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aop_g12683 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Aspi01Gene15292.t1 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Cre12.g487600 EMB1265,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Dcu_g01795 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.06 OrthoFinder output from all 47 species
Gb_40959 EMB1265,... no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os09g39590.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Len_g29648 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Lfl_g36462 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Mp3g01860.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Zm00001e020763_P002 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025069 Cpsf2_C 657 737
IPR001279 Metallo-B-lactamas 22 198
IPR022712 Beta_Casp 242 364
IPR011108 RMMBL 540 599
No external refs found!