Ceric.09G054000.1 (Ceric.09G054000)


Aliases : Ceric.09G054000

Description : component *(NOT3) of mRNA deadenylation CCR4-NOT complex & original description: pacid=50587762 polypeptide=Ceric.09G054000.1.p locus=Ceric.09G054000 ID=Ceric.09G054000.1.v2.1 annot-version=v2.1


Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.09G054000.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00093740 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.07 OrthoFinder output from all 47 species
AMTR_s00012p00217710 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
AT5G18230 No alias transcription regulator NOT2/NOT3/NOT5 family protein 0.07 OrthoFinder output from all 47 species
Adi_g021088 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Ala_g02487 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Aob_g23408 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aop_g00795 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031433 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Cre04.g227350 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Dcu_g13304 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.08 OrthoFinder output from all 47 species
Ehy_g01609 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01033382001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.09 OrthoFinder output from all 47 species
LOC_Os03g44900.1 LOC_Os03g44900 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Lfl_g02194 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
MA_16801g0010 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Mp5g06180.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Ore_g18536 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.08 OrthoFinder output from all 47 species
Pir_g07657 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ppi_g05930 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Solyc12g019860.2.1 Solyc12g019860 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Tin_g05223 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.06 OrthoFinder output from all 47 species
Zm00001e005243_P002 Zm00001e005243 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.06 OrthoFinder output from all 47 species
Zm00001e012376_P003 Zm00001e012376 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007207 Not_N 4 226
IPR007282 NOT2/3/5_C 719 850
No external refs found!