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Aliases : Ceric.09G002500
Description : RNA chaperone *(RZ1) & original description: pacid=50588381 polypeptide=Ceric.09G002500.1.p locus=Ceric.09G002500 ID=Ceric.09G002500.1.v2.1 annot-version=v2.1
Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00251200 | evm_27.TU.AmTr_v1... | Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00013p00256900 | GRP2, ATGRP2,... | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00030p00132070 | ATRZ-1A,... | Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00030p00198740 | CCR2, ATGRP7,... | Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00154p00024620 | GR-RBP3,... | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G60650 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein with... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g016848 | CCR2, ATGRP7,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g111293 | CCR2, ATGRP7,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g12373 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g05447 | No alias | RNA chaperone *(RZ1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g05819 | No alias | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06481 | GRP2, ATGRP2, GR-RBP2 | RNA editing factor *(ORRM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07993 | GR-RBP3 | RNA editing factor *(ORRM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g21798 | No alias | RNA chaperone *(RZ1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g29184 | ATRZ-1A | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g009723 | No alias | RNA chaperone *(RZ1) & original description: CDS=187-939 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g009790 | CCR2, ATGRP7,... | not classified & original description: CDS=136-657 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011258 | CCR2, ATGRP7,... | not classified & original description: CDS=99-740 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0116.g046316 | GRP2, ATGRP2, GR-RBP2 | RNA editing factor *(ORRM3) & original description: CDS=161-592 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g04821 | No alias | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g08805 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g27479 | CCR2, ATGRP7,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g31532 | GR-RBP3 | RNA editing factor *(ORRM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g55211 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cre17.g729150 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g09095 | GRP2, ATGRP2, GR-RBP2 | RNA editing factor *(ORRM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g48605 | No alias | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g21776 | GRP2, ATGRP2, GR-RBP2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g04232 | GRP2, ATGRP2, GR-RBP2 | RNA editing factor *(ORRM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Gb_03401 | ATRZ-1A | Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os10g17454.1 | GR-RBP3, LOC_Os10g17454 | RNA editing factor (ORRM) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g07508 | No alias | RNA chaperone *(RZ1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g11735 | GR-RBP4, GRP4 | RNA editing factor *(ORRM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_168323g0010 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g32203 | GRP2, ATGRP2, GR-RBP2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g00490 | GRP2, ATGRP2, GR-RBP2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g10436 | GR-RBP4, GRP4 | RNA editing factor *(ORRM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g17696 | GR-RBP4, GRP4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g23738 | No alias | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g05645 | GR-RBP3 | RNA editing factor *(ORRM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g15799 | GRP2, ATGRP2, GR-RBP2 | RNA editing factor *(ORRM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g18712 | ATRZ-1A | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g29374 | GR-RBP3 | RNA editing factor *(ORRM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g33177 | GR-RBP3 | RNA editing factor *(ORRM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g03416 | No alias | RNA chaperone *(RZ1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g04318 | No alias | RNA chaperone *(RZ1) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g14490 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g17461 | GR-RBP4, GRP4 | RNA editing factor *(ORRM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g19209 | CCR1, GR-RBP8,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g05599 | GR-RBP4, GRP4 | RNA editing factor *(ORRM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pnu_g05800 | GRP2, ATGRP2, GR-RBP2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g17831 | ATRZ-1A | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g26099 | CCR2, ATGRP7,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g17262 | GR-RBP4, GRP4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0021.g008411 | No alias | RNA chaperone *(RZ1) & original description: CDS=12-860 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0024.g009193 | No alias | not classified & original description: CDS=133-507 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0112.g020723 | No alias | not classified & original description: CDS=1-762 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g09617 | No alias | RNA editing factor *(ORRM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g09618 | No alias | RNA editing factor *(ORRM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14736 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g35045 | No alias | RNA chaperone *(RZ1) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g38661 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo81392 | GRP2, ATGRP2, GR-RBP2 | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g104840.4.1 | ATRZ-1A, Solyc01g104840 | RNA chaperone (RZ1|GR-RBP) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g071560.4.1 | Solyc03g071560 | RNA chaperone (RZ1|GR-RBP) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc10g081180.2.1 | GR-RBP3, Solyc10g081180 | RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc11g008210.3.1 | Solyc11g008210 | Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g10878 | No alias | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g16011 | ATRZ-1A | RNA chaperone *(RZ1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g04956 | No alias | RNA chaperone *(RZ1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e005260_P002 | Zm00001e005260 | RNA chaperone (RZ1|GR-RBP) | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e011440_P001 | Zm00001e011440 | RNA chaperone (RZ1|GR-RBP) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e028502_P003 | Zm00001e028502 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e033010_P001 | Zm00001e033010 | RNA chaperone (RZ1|GR-RBP) | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003729 | mRNA binding | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| CC | GO:0035145 | exon-exon junction complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| No external refs found! |