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  5. Ceric.08G007800.1

Ceric.08G007800.1 (Ceric.08G007800)


Aliases : Ceric.08G007800

Description : sRNA cargo-loading helicase *(RH11/37) of extracellular vesicle trafficking & original description: pacid=50638284 polypeptide=Ceric.08G007800.1.p locus=Ceric.08G007800 ID=Ceric.08G007800.1.v2.1 annot-version=v2.1


Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.08G007800.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00136740 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00133p00101570 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g103003 No alias sRNA cargo-loAding helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Adi_g103004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21917 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Als_g46511 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Dac_g36478 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
GSVIVT01001348001 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_15078 No alias DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
LOC_Os07g10250.1 LOC_Os07g10250 DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Len_g30354 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
MA_137324g0010 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_181586g0010 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Ore_g30360 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Pir_g08966 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008406 No alias not classified & original description: CDS=57-1802 0.03 OrthoFinder output from all 47 species
Sam_g15279 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Sam_g19979 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Smo267628 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Solyc03g052980.3.1 Solyc03g052980 DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g05536 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Tin_g14053 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Zm00001e011396_P001 Zm00001e011396 DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e011397_P001 Zm00001e011397 DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 212 393
IPR001650 Helicase_C 449 548
No external refs found!