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  5. Ceric.07G056700.1

Ceric.07G056700.1 (Ceric.07G056700)


Aliases : Ceric.07G056700

Description : regulatory protein *(BDR) involved in RNA polymerase-II transcription & original description: pacid=50626805 polypeptide=Ceric.07G056700.1.p locus=Ceric.07G056700 ID=Ceric.07G056700.1.v2.1 annot-version=v2.1


Gene families : OG0002847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002847_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.07G056700.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00104490 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT5G25520 No alias SPOC domain / Transcription elongation factor S-II protein 0.05 OrthoFinder output from all 47 species
Adi_g036304 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g081371 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g02676 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.08 OrthoFinder output from all 47 species
Als_g29206 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.06 OrthoFinder output from all 47 species
Aob_g15719 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.02 OrthoFinder output from all 47 species
Aop_g20897 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.04 OrthoFinder output from all 47 species
Azfi_s0042.g026931 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.04 OrthoFinder output from all 47 species
Cre02.g073250 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g13630 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.04 OrthoFinder output from all 47 species
Dcu_g46980 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.04 OrthoFinder output from all 47 species
Dcu_g50904 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.08 OrthoFinder output from all 47 species
GSVIVT01035723001 No alias No description available 0.08 OrthoFinder output from all 47 species
LOC_Os02g11780.1 LOC_Os02g11780 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g09763 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.07 OrthoFinder output from all 47 species
MA_10426543g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10432543g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp4g01870.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g36175 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.08 OrthoFinder output from all 47 species
Ppi_g39270 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016191 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023849 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.03 OrthoFinder output from all 47 species
Sam_g36170 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.04 OrthoFinder output from all 47 species
Solyc07g007850.2.1 Solyc07g007850 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g04580 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.07 OrthoFinder output from all 47 species
Zm00001e014496_P001 Zm00001e014496 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e024973_P001 Zm00001e024973 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012921 SPOC_C 544 687
IPR003618 TFIIS_cen_dom 221 314
No external refs found!