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  5. Ceric.07G023500.1

Ceric.07G023500.1 (LINC2, Ceric.07G023500)


Aliases : LINC2, Ceric.07G023500

Description : nuclear lamina lamin-like protein *(CRWN) & original description: pacid=50626904 polypeptide=Ceric.07G023500.1.p locus=Ceric.07G023500 ID=Ceric.07G023500.1.v2.1 annot-version=v2.1


Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.07G023500.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00204550 LINC4,... Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.04 OrthoFinder output from all 47 species
AT1G67230 LINC1 little nuclei1 0.05 OrthoFinder output from all 47 species
AT1G68790 LINC3 little nuclei3 0.05 OrthoFinder output from all 47 species
AT5G65770 LINC4 little nuclei4 0.03 OrthoFinder output from all 47 species
AT5G65780 ATBCAT-5 branched-chain amino acid aminotransferase 5 /... 0.07 OrthoFinder output from all 47 species
Adi_g018491 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Adi_g055294 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Aev_g06792 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Ala_g08422 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.08 OrthoFinder output from all 47 species
Als_g03902 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Als_g29067 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Aob_g07969 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Aop_g06258 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Aop_g11108 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene48756.t1 LINC2, Aspi01Gene48756 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010369 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g09858 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g13504 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011972001 LINC3 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.08 OrthoFinder output from all 47 species
GSVIVT01031076001 LINC1 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.07 OrthoFinder output from all 47 species
LOC_Os01g56140.1 LINC4, LOC_Os01g56140 CRWN nuclear lamina lamin-like protein 0.05 OrthoFinder output from all 47 species
LOC_Os02g48010.1 LINC1, LOC_Os02g48010 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
Lfl_g03466 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
MA_10432363g0010 LINC2 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
MA_78855g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g21160.1 LINC2 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
Msp_g26620 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Msp_g42740 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g03849 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g10182 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Ore_g19679 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Ore_g28255 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Pir_g46798 LINC4 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Sam_g14580 No alias nuclear lamina lamin-like protein *(CRWN) & original... 0.09 OrthoFinder output from all 47 species
Solyc02g091960.4.1 LINC4, Solyc02g091960 CRWN nuclear lamina lamin-like protein 0.04 OrthoFinder output from all 47 species
Zm00001e019705_P002 LINC4, Zm00001e019705 CRWN nuclear lamina lamin-like protein 0.08 OrthoFinder output from all 47 species
Zm00001e023357_P001 LINC1, Zm00001e023357 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!