Ceric.07G018700.1 (ATRPA70A, RPA1A,...)

Aliases : ATRPA70A, RPA1A, ATRPA1A, RPA70A, Ceric.07G018700

Description : component *(RPA1) of RPA presynaptic filament assembly factor complex & original description: pacid=50627228 polypeptide=Ceric.07G018700.1.p locus=Ceric.07G018700 ID=Ceric.07G018700.1.v2.1 annot-version=v2.1

Gene families : OG0002229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002229_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.07G018700.1

Target	Alias	Description	ECC score	Gene Family Method
Als_g07746	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.05	OrthoFinder output from all 47 species
Aspi01Gene23730.t1	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000823.18	No alias	Replication protein A 70 kDa DNA-binding subunit E...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000823.19	ATRPA70A, RPA1A,...	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.02	OrthoFinder output from all 47 species
Cre17.g718850	ATRPA70A, RPA1A,...	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.02	OrthoFinder output from all 47 species
MA_217423g0010	ATRPA70A, RPA1A,...	component RPA1 of single-stranded-DNA binding RPA...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0107.g020372	ATRPA70A, RPA1A,...	component *(RPA1) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Zm00001e029651_P001	Zm00001e029651	component RPA1 of single-stranded-DNA binding RPA...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008156	negative regulation of DNA replication	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
BP	GO:0045005	DNA-templated DNA replication maintenance of fidelity	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048478	replication fork protection	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0090329	regulation of DNA-templated DNA replication	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
BP	GO:2000104	negative regulation of DNA-templated DNA replication	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031657	REPA_OB_2	369	473
IPR004365	NA-bd_OB_tRNA	259	328
IPR001878	Znf_CCHC	811	826
IPR007199	Rep_factor-A_N	5	101
IPR013955	Rep_factor-A_C	530	679

External Links

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Ceric.07G018700.1 (ATRPA70A, RPA1A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation