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  5. Ceric.06G070600.1

Ceric.06G070600.1 (Ceric.06G070600)


Aliases : Ceric.06G070600

Description : mRNA chaperone *(RLSB/BSF) & original description: pacid=50619729 polypeptide=Ceric.06G070600.1.p locus=Ceric.06G070600 ID=Ceric.06G070600.1.v2.1 annot-version=v2.1


Gene families : OG0002842 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.06G070600.1
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00066980 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.06 OrthoFinder output from all 47 species
AT1G71720 No alias Nucleic acid-binding proteins superfamily 0.03 OrthoFinder output from all 47 species
Adi_g084122 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113283 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07364 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g17119 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11303 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013706001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.06 OrthoFinder output from all 47 species
LOC_Os05g45920.1 LOC_Os05g45920 plastidial mRNA chaperone (RLSB/BSF) 0.04 OrthoFinder output from all 47 species
Len_g21211 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17103 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
MA_18788g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g06256 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g04958 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g16529 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g45497 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15780 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032251_P002 Zm00001e032251 plastidial mRNA chaperone (RLSB/BSF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!