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  5. Ceric.06G054800.1

Ceric.06G054800.1 (emb1138, Ceric.06G054800)


Aliases : emb1138, Ceric.06G054800

Description : not classified & original description: pacid=50619432 polypeptide=Ceric.06G054800.1.p locus=Ceric.06G054800 ID=Ceric.06G054800.1.v2.1 annot-version=v2.1


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.06G054800.1
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT3G22330 PMH2, ATRH53 putative mitochondrial RNA helicase 2 0.02 OrthoFinder output from all 47 species
Ala_g10440 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.07 OrthoFinder output from all 47 species
Als_g05682 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Aob_g09620 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0052.g031680 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s2641.g112487 emb1138 not classified & original description: CDS=202-2694 0.04 OrthoFinder output from all 47 species
Cba_g02044 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Cba_g18561 PRH75 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g01008 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Dac_g02286 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21286 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00876 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Dde_g09784 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os12g41715.1 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Len_g18992 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
MA_17924g0010 PRH75 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Msp_g13082 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g02348 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Pir_g05277 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Pir_g16512 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06711 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.07 OrthoFinder output from all 47 species
Sam_g26329 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Spa_g06515 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.07 OrthoFinder output from all 47 species
Spa_g08414 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Spa_g18181 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g39635 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e003219_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Zm00001e011716_P001 emb1138, Zm00001e011716 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e018107_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Zm00001e034728_P002 PRH75, Zm00001e034728 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 139 276
IPR001650 Helicase_C 326 378
No external refs found!