Ceric.06G040200.1 (MAC3A, Ceric.06G040200)

Aliases : MAC3A, Ceric.06G040200

Description : E3 ubiquitin protein ligase *(PUB60) & original description: pacid=50619993 polypeptide=Ceric.06G040200.1.p locus=Ceric.06G040200 ID=Ceric.06G040200.1.v2.1 annot-version=v2.1

Gene families : OG0002806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.06G040200.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g088167	MAC3B	E3 ubiquitin protein ligase *(PUB60) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g56991	MAC3A	E3 ubiquitin protein ligase *(PUB60) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g05020	MAC3B	E3 ubiquitin protein ligase *(PUB60) & original description: none	0.06	OrthoFinder output from all 47 species
Cba_g62492	MAC3B	E3 ubiquitin protein ligase *(PUB60) & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001501.3	MAC3B	Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021493.5	MAC3B	Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Cre02.g073650	MAC3B	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Dcu_g02996	MAC3A	E3 ubiquitin protein ligase *(PUB60) & original description: none	0.06	OrthoFinder output from all 47 species
LOC_Os10g32880.1	MAC3A, LOC_Os10g32880	component MAC3 of non-snRNP MOS4-associated complex	0.05	OrthoFinder output from all 47 species
MA_20260g0010	MAC3A	component MAC3 of non-snRNP MOS4-associated complex	0.04	OrthoFinder output from all 47 species
Mp4g08560.1	MAC3A	component MAC3 of non-snRNP MOS4-associated complex	0.04	OrthoFinder output from all 47 species
Nbi_g11129	MAC3B	E3 ubiquitin protein ligase *(PUB60) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g23764	MAC3B	E3 ubiquitin protein ligase *(PUB60) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g17949	MAC3B	E3 ubiquitin protein ligase *(PUB60) & original description: none	0.07	OrthoFinder output from all 47 species
Smo437541	MAC3B	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Solyc09g090660.3.1	MAC3A, Solyc09g090660	component MAC3 of non-snRNP MOS4-associated complex	0.06	OrthoFinder output from all 47 species
Spa_g43376	MAC3B	E3 ubiquitin protein ligase *(PUB60) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e004625_P001	MAC3B, Zm00001e004625	component MAC3 of non-snRNP MOS4-associated complex	0.05	OrthoFinder output from all 47 species
Zm00001e012723_P001	MAC3B, Zm00001e012723	component MAC3 of non-snRNP MOS4-associated complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031124	mRNA 3'-end processing	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	3	54
IPR013915	Pre-mRNA_splic_Prp19	66	127
IPR001680	WD40_repeat	254	290
IPR001680	WD40_repeat	299	336
IPR001680	WD40_repeat	386	421

External Links

No external refs found!

Ceric.06G040200.1 (MAC3A, Ceric.06G040200)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation