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  5. Ceric.06G021600.1

Ceric.06G021600.1 (Ceric.06G021600)


Aliases : Ceric.06G021600

Description : not classified & original description: pacid=50619132 polypeptide=Ceric.06G021600.1.p locus=Ceric.06G021600 ID=Ceric.06G021600.1.v2.1 annot-version=v2.1


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.06G021600.1

Target Alias Description ECC score Gene Family Method Actions
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.03 OrthoFinder output from all 47 species
Adi_g008564 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.04 OrthoFinder output from all 47 species
Adi_g103437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01607 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_23737 AtRH36, SWA3, RH36 SSU processome assembly factor (SWA3) 0.03 OrthoFinder output from all 47 species
LOC_Os07g43980.1 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.04 OrthoFinder output from all 47 species
Lfl_g02957 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.03 OrthoFinder output from all 47 species
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g007550.3.1 Solyc10g007550 DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g11648 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e013281_P004 Zm00001e013281 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e035639_P002 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 38 205
IPR001650 Helicase_C 242 348
No external refs found!