1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.05G088800.1

Ceric.05G088800.1 (Ceric.05G088800)


Aliases : Ceric.05G088800

Description : nucleoporin of nuclear pore complex *(NUP50) & original description: pacid=50577759 polypeptide=Ceric.05G088800.1.p locus=Ceric.05G088800 ID=Ceric.05G088800.1.v2.1 annot-version=v2.1


Gene families : OG0003460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003460_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.05G088800.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Ala_g06239 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.04 OrthoFinder output from all 47 species
Als_g33092 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Aop_g05959 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene24956.t1 Aspi01Gene24956 nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Cba_g68744 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Dac_g11501 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g08139 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01017123001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Len_g15298 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Msp_g09071 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Spa_g08466 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.04 OrthoFinder output from all 47 species
Tin_g10134 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e020069_P002 Zm00001e020069 NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Zm00001e028119_P001 Zm00001e028119 NUP50 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0046907 intracellular transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006144 purine nucleobase metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009113 purine nucleobase biosynthetic process IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015007 NUP2/50/61 13 72
IPR000156 Ran_bind_dom 393 508
No external refs found!