Ceric.05G059300.1 (Ceric.05G059300)


Aliases : Ceric.05G059300

Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: pacid=50578224 polypeptide=Ceric.05G059300.1.p locus=Ceric.05G059300 ID=Ceric.05G059300.1.v2.1 annot-version=v2.1


Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.05G059300.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00089340 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
AT5G14320 No alias Ribosomal protein S13/S18 family 0.33 OrthoFinder output from all 47 species
Adi_g042167 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aev_g04341 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g00666 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Aob_g00300 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g40481 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Aspi01Gene65448.t1 Aspi01Gene65448 component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035921 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.17 OrthoFinder output from all 47 species
Cre12.g493950 No alias Protein biosynthesis.organelle translation... 0.2 OrthoFinder output from all 47 species
Dac_g26723 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g44492 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ehy_g00682 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01008933001 No alias Protein biosynthesis.organelle translation... 0.12 OrthoFinder output from all 47 species
Gb_24491 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os03g49710.1 LOC_Os03g49710 component mtRPS13|psRPS13 of small ribosomal subunit... 0.26 OrthoFinder output from all 47 species
Len_g05067 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Len_g07705 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g00631 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
MA_10431241g0010 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.05 OrthoFinder output from all 47 species
Mp1g18230.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.27 OrthoFinder output from all 47 species
Msp_g02627 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Nbi_g15772 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ore_g09656 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Pir_g35705 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pnu_g13107 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ppi_g02591 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014746 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.17 OrthoFinder output from all 47 species
Sam_g47748 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc05g005880.2.1 Solyc05g005880 component mtRPS13|psRPS13 of small ribosomal subunit... 0.12 OrthoFinder output from all 47 species
Spa_g00577 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Tin_g04300 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Zm00001e005396_P004 Zm00001e005396 component mtRPS13|psRPS13 of small ribosomal subunit... 0.22 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 42 150
No external refs found!