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  5. Ceric.04G103500.1

Ceric.04G103500.1 (PUB13, ATPUB13,...)


Aliases : PUB13, ATPUB13, Ceric.04G103500

Description : not classified & original description: pacid=50631830 polypeptide=Ceric.04G103500.1.p locus=Ceric.04G103500 ID=Ceric.04G103500.1.v2.1 annot-version=v2.1


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.04G103500.1
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 PUB15,... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00063p00200790 evm_27.TU.AmTr_v1... U-box domain-containing protein 11 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.05 OrthoFinder output from all 47 species
AT3G46510 PUB13, ATPUB13 plant U-box 13 0.02 OrthoFinder output from all 47 species
AT4G21350 PUB8, B80 plant U-box 8 0.02 OrthoFinder output from all 47 species
Aob_g02170 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g60695 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0292.g063403 No alias not classified & original description: CDS=1-2253 0.02 OrthoFinder output from all 47 species
Dac_g01449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16936 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os06g01304.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.07 OrthoFinder output from all 47 species
LOC_Os12g38210.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Lfl_g13185 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.03 OrthoFinder output from all 47 species
MA_9917294g0010 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Mp5g12560.1 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Msp_g01498 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14639 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g24581 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07686 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37794 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017664 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=217-2226 0.03 OrthoFinder output from all 47 species
Sam_g25175 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39035 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Smo61948 PUB13, ATPUB13 U-box domain-containing protein 13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc02g072080.1.1 ATPUB17, PUB17,... U-box domain-containing protein 17 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Tin_g07352 ATPUB17, PUB17 E3 ubiquiTin ligase & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0004664 prephenate dehydratase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004930 G protein-coupled receptor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0097354 prenylation IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 258 327
IPR000225 Armadillo 384 422
IPR000225 Armadillo 466 504
No external refs found!