Ceric.03G087800.1 (Ceric.03G087800)

Aliases : Ceric.03G087800

Description : component *(CRN/MAC10) of non-snRNP MOS4-associated complex & original description: pacid=50573246 polypeptide=Ceric.03G087800.1.p locus=Ceric.03G087800 ID=Ceric.03G087800.1.v2.1 annot-version=v2.1

Gene families : OG0004678 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004678_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.03G087800.1
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00234420	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome-associated...	0.05	OrthoFinder output from all 47 species
Ala_g08121	No alias	component *(CRN/MAC10) of non-snRNP MOS4-associated...	0.03	OrthoFinder output from all 47 species
Als_g21795	No alias	component *(CRN/MAC10) of non-snRNP MOS4-associated...	0.03	OrthoFinder output from all 47 species
Aspi01Gene70289.t1	Aspi01Gene70289	component *(CRN/MAC10) of non-snRNP MOS4-associated...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000128.3	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Cre14.g621000	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.05	OrthoFinder output from all 47 species
Dcu_g01655	No alias	component *(CRN/MAC10) of non-snRNP MOS4-associated...	0.02	OrthoFinder output from all 47 species
Gb_24869	No alias	component CRN/MAC10 of non-snRNP MOS4-associated complex	0.03	OrthoFinder output from all 47 species
LOC_Os05g22260.1	LOC_Os05g22260	component CRN/MAC10 of non-snRNP MOS4-associated complex	0.03	OrthoFinder output from all 47 species
MA_218488g0010	No alias	component CRN/MAC10 of non-snRNP MOS4-associated complex	0.02	OrthoFinder output from all 47 species
Mp6g08750.1	No alias	component CRN/MAC10 of non-snRNP MOS4-associated complex	0.05	OrthoFinder output from all 47 species
Msp_g08808	No alias	component *(CRN/MAC10) of non-snRNP MOS4-associated...	0.03	OrthoFinder output from all 47 species
Nbi_g03073	No alias	component *(CRN/MAC10) of non-snRNP MOS4-associated...	0.04	OrthoFinder output from all 47 species
Pir_g60627	No alias	component *(CRN/MAC10) of non-snRNP MOS4-associated...	0.03	OrthoFinder output from all 47 species
Sam_g12026	No alias	component *(CRN/MAC10) of non-snRNP MOS4-associated...	0.05	OrthoFinder output from all 47 species
Solyc12g056080.2.1	Solyc12g056080	component CRN/MAC10 of non-snRNP MOS4-associated complex	0.09	OrthoFinder output from all 47 species
Tin_g22944	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e005158_P001	Zm00001e005158	component CRN/MAC10 of non-snRNP MOS4-associated complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005669	transcription factor TFIID complex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003107	HAT	206	234

External Links

No external refs found!

Ceric.03G087800.1 (Ceric.03G087800)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation