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  5. Ceric.03G060400.1

Ceric.03G060400.1 (EMB3012, Ceric.03G060400)


Aliases : EMB3012, Ceric.03G060400

Description : nucleoporin of nuclear pore complex *(GP210) & original description: pacid=50571566 polypeptide=Ceric.03G060400.1.p locus=Ceric.03G060400 ID=Ceric.03G060400.1.v2.1 annot-version=v2.1


Gene families : OG0005031 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005031_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.03G060400.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00191680 EMB3012,... Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
AT5G40480 EMB3012 embryo defective 3012 0.08 OrthoFinder output from all 47 species
Cba_g23170 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g24045 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01032403001 EMB3012 Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Len_g30750 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g05759 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.02 OrthoFinder output from all 47 species
MA_10426740g0010 EMB3012 Nuclear pore complex protein GP210 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10432657g0010 EMB3012 GP210 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
MA_53554g0010 EMB3012 GP210 nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Mp1g06580.1 EMB3012 GP210 nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Pir_g33707 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Spa_g10547 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e009488_P002 EMB3012, Zm00001e009488 GP210 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!