Ceric.02G070200.1 (ATWHY1, WHY1, PTAC1,...)

Aliases : ATWHY1, WHY1, PTAC1, Ceric.02G070200

Description : recombination mediator *(Whirly) & original description: pacid=50583990 polypeptide=Ceric.02G070200.1.p locus=Ceric.02G070200 ID=Ceric.02G070200.1.v2.1 annot-version=v2.1

Gene families : OG0002379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002379_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.02G070200.1
Cluster	HCCA: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
AT1G71260	WHY2, ATWHY2	WHIRLY 2	0.06	OrthoFinder output from all 47 species
AT2G02740	WHY3, PTAC11, ATWHY3	ssDNA-binding transcriptional regulator	0.03	OrthoFinder output from all 47 species
Azfi_s0290.g063328	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g11449	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.03	OrthoFinder output from all 47 species
MA_126278g0010	ATWHY1, WHY1, PTAC1	recombination mediator (Whirly)	0.03	OrthoFinder output from all 47 species
Ppi_g52455	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015441	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description:...	0.04	OrthoFinder output from all 47 species
Sam_g29994	No alias	recombination mediator *(Whirly) & original description: none	0.05	OrthoFinder output from all 47 species
Solyc05g007100.3.1	ATWHY1, WHY1,...	recombination mediator (Whirly). Whirly-type plastidial...	0.04	OrthoFinder output from all 47 species
Zm00001e029993_P002	ATWHY1, WHY1,...	recombination mediator (Whirly). Whirly-type plastidial...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013742	Whirly	52	185

External Links

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Ceric.02G070200.1 (ATWHY1, WHY1, PTAC1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation