Ceric.02G044300.1 (ATPUB45, PUB45,...)

Aliases : ATPUB45, PUB45, Ceric.02G044300

Description : U-Box-group-II E3 ubiquitin ligase & original description: pacid=50585399 polypeptide=Ceric.02G044300.1.p locus=Ceric.02G044300 ID=Ceric.02G044300.1.v2.1 annot-version=v2.1

Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.02G044300.1
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
AT3G47820	PUB39	PLANT U-BOX 39	0.03	OrthoFinder output from all 47 species
Aspi01Gene62638.t1	PUB38, ATPUB38,...	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03795	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g16204	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g02186	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
MA_115424g0010	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Msp_g15300	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
Pir_g18630	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001736	PUB39	U-Box-group-II E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Sam_g07889	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Smo90666	PUB39	U-box domain-containing protein 38 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Spa_g26915	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	8	75
IPR000225	Armadillo	409	447
IPR000225	Armadillo	450	483

External Links

No external refs found!

Ceric.02G044300.1 (ATPUB45, PUB45,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation