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  5. Ceric.02G012700.1

Ceric.02G012700.1 (RPOC2, Ceric.02G012700)


Aliases : RPOC2, Ceric.02G012700

Description : core component *(RpoC2) of plastid-encoded RNA polymerase & original description: pacid=50583760 polypeptide=Ceric.02G012700.1.p locus=Ceric.02G012700 ID=Ceric.02G012700.1.v2.1 annot-version=v2.1


Gene families : OG0004582 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004582_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.02G012700.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00130230 RPOC2,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.04 OrthoFinder output from all 47 species
AMTR_s00390p00012910 RPOC2,... Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
ATCG00170 RPOC2 DNA-directed RNA polymerase family protein 0.13 OrthoFinder output from all 47 species
Aev_g15088 RPOC2 core component *(RpoC2) of plastid-encoded RNA... 0.17 OrthoFinder output from all 47 species
Ceric.02G016600.1 RPOC2, Ceric.02G016600 core component *(RpoC2) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Ceric.06G046000.1 RPOC2, Ceric.06G046000 not classified & original description: pacid=50620845... 0.13 OrthoFinder output from all 47 species
Ceric.29G004900.1 RPOC2, Ceric.29G004900 core component *(RpoC2) of plastid-encoded RNA... 0.06 OrthoFinder output from all 47 species
Ceric.32G060700.1 RPOC2, Ceric.32G060700 not classified & original description: pacid=50597350... 0.08 OrthoFinder output from all 47 species
Ceric.38G010100.1 RPOC2, Ceric.38G010100 core component *(RpoC2) of plastid-encoded RNA... 0.08 OrthoFinder output from all 47 species
Ceric.38G010200.1 RPOC2, Ceric.38G010200 not classified & original description: pacid=50579905... 0.13 OrthoFinder output from all 47 species
GSVIVT01017094001 RPOC2 DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
GSVIVT01019173001 RPOC2 DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.01 OrthoFinder output from all 47 species
GSVIVT01032753001 RPOC2 DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
Gb_02726 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.04 OrthoFinder output from all 47 species
Gb_09031 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.07 OrthoFinder output from all 47 species
Gb_09032 RPOC2 DNA-directed RNA polymerase subunit beta OS=Pinus... 0.04 OrthoFinder output from all 47 species
Gb_09773 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.04 OrthoFinder output from all 47 species
Gb_10415 RPOC2 DNA-directed RNA polymerase subunit beta OS=Pinus... 0.06 OrthoFinder output from all 47 species
Gb_26285 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.06 OrthoFinder output from all 47 species
LOC_Os04g16830.1 RPOC2, LOC_Os04g16830 DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027467 RPOC2 not classified & original description: CDS=1-840 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027468 RPOC2 not classified & original description: CDS=1-702 0.04 OrthoFinder output from all 47 species
Solyc00g500052.1.1 RPOC2, Solyc00g500052 RpoC1 core component plastid-encoded RNA polymerase.... 0.09 OrthoFinder output from all 47 species
Solyc00g500135.1.1 RPOC2, Solyc00g500135 RpoC1 core component plastid-encoded RNA polymerase.... 0.09 OrthoFinder output from all 47 species
Solyc00g500205.1.1 RPOC2, Solyc00g500205 RpoC1 core component plastid-encoded RNA polymerase.... 0.09 OrthoFinder output from all 47 species
Solyc00g500290.1.1 RPOC2, Solyc00g500290 RpoC2 core component plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
MF GO:0009922 fatty acid elongase activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR007083 RNA_pol_Rpb1_4 11 46
IPR007081 RNA_pol_Rpb1_5 58 277
No external refs found!