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  5. Ceric.01G033200.1

Ceric.01G033200.1 (U1-70K, U1SNRNP,...)


Aliases : U1-70K, U1SNRNP, Ceric.01G033200

Description : component *(U1-70K) of U1 snRNP complex & original description: pacid=50592177 polypeptide=Ceric.01G033200.1.p locus=Ceric.01G033200 ID=Ceric.01G033200.1.v2.1 annot-version=v2.1


Gene families : OG0003392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.01G033200.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00067090 U1-70K, U1SNRNP,... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Als_g10647 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g13725 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s2260.g110011 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g10772 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Dcu_g24491 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01018981001 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Gb_32834 U1-70K, U1SNRNP U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g19673 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Pnu_g11483 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Sam_g27555 No alias component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Solyc02g085420.4.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.05 OrthoFinder output from all 47 species
Spa_g26650 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Tin_g11433 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Zm00001e012949_P002 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 140 209
IPR022023 U1snRNP70_N 41 129
No external refs found!